Angular JS embedded folder- WebStorm


I had a problem when creating a new project with WebStorm. When i run git commit i get the message shown in the screenshot


When i remove the embedded file and i do commit, it uploads all the stuff except this. If i make another commit it uploads the file ngApp like this 42

and not like a normal project directory.
I removed the git master and reinitialized it many times but nothing worked. is it a bug, a setting of WebStorm.